enrich_GO_terms-class: enrich_GO_terms class object definition.

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

This class is invoked by merge_enrich_terms method in order to store the merged data.table and associated metadata.

Slots

same_genes_background

logical.

input

a list containing named elements. Each element must contain the name of topGOdata-class object created by create_topGOdata method and the associated topGOresult-class object(s) to combinate (see examples in merge_enrich_terms).

ont

ontology used "MF", "BP", or "CC".

topGO

a list with topGO objects summary informations.

data

a merged data.table of enriched GO terms (p<0.01) in at least once with GO descriptions and statistical values.

See Also

Other enrich_GO_terms: Upset, overLapper, show_heatmap, show_table

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.