GO_clusters-class: GO_clusters class object

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

This class is invoked by GOterms_heatmap and GOclusters_heatmap methods to store all results produced.

Slots

db

database source.

stamp

date of stamp.

organism

target species.

topGO

topGO objects summary.

ont

ontology (MF, BP, or CC).

IC

Information Content (IC).

enrich_GOs

enrich_GO_terms-class object.

terms_dist

distance between GO terms based on semantic similiarity.

clusters_dist

distance between GO groups based on semantic similiarity.

hcl_params

Hierarchical clustering parameters used.

dendrograms

GO terms and samples dendrograms.

samples.gp

samples groups.

heatmap

GO terms and GO groups heatmaps.

See Also

Other GO_clusters: GOclusters_heatmap, clusters_cor, compare_clusters, show_heatmap, show_table

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.