available_organisms-methods: Display available organisms from a specified database.

In abrionne/ViSEAGO: ViSEAGO: Easier data mining of biological functions organized into clusters using Gene Ontology and semantic similarity

Description

Display an interactive table with available organisms from a genomic ressource database (Bioconductor, EntrezGene, Ensembl, Uniprot).

Usage

available_organisms(object)

## S4 method for signature 'genomic_ressource'
available_organisms(object)

Arguments

object

a genomic_ressource-class object created by Bioconductor2GO, EntrezGene2GO, Ensembl2GO,or Uniprot2GO methods.

Details

an interactive datatable.

Value

javascript datatable

References

Yihui Xie (2016). DT: A Wrapper of the JavaScript Library 'DataTables'. R package version 0.2. https://CRAN.R-project.org/package=DT

See Also

Other genomic_ressource: Bioconductor2GO, Custom2GO, Ensembl2GO, EntrezGene2GO, Uniprot2GO, annotate, genomic_ressource-class, taxonomy

Other visualization: GOclusters_heatmap, GOcount, GOterms_heatmap, Upset, overLapper, show_heatmap, show_table

Examples

# display Bioconductor table
Bioconductor<-ViSEAGO::Bioconductor2GO()
ViSEAGO::available_organisms(Bioconductor)
## Not run: 

# display EntrezGene table
EntrezGene<-ViSEAGO::EntrezGene2GO()
ViSEAGO::available_organisms(EntrezGene)

# display Ensembl table
Ensembl<-ViSEAGO::Ensembl2GO()
ViSEAGO::available_organisms(Ensembl)

# display Uniprot table
Uniprot<-ViSEAGO::Uniprot2GO()
ViSEAGO::available_organisms(Uniprot)

## End(Not run)

abrionne/ViSEAGO documentation built on June 13, 2019, 2:27 p.m.