adamstruck/RECD: Repeat Exansion & Contraction Detection
Version 0.0.2

This package uses the .dat output file from Tandem Repeat Finder (G. Benson, Nucleic Acids Research, 1999). Recommended parameters are "2 12 12 80 10 16 8 -d". A python executable is provided in the package that will parse the .dat file produced by TRF and output it in a useable tsv format.

Getting started

Package details

AuthorAdam Struck
Maintainer<[email protected]>
License
Version0.0.2
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("adamstruck/RECD")
adamstruck/RECD documentation built on June 3, 2017, 1:46 p.m.