API for adamstruck/RECD
Repeat Exansion & Contraction Detection

Global functions
DEXSeqAnalysis Man page Source code
FacingVersusFlanking Man page
FacingVersusFlankingDEseq Man page
IMD.logLikelihoodOffset Source code
IMD.mass.sum Source code
IMD.mass.sums Source code
RepeatsInRegion Man page Source code
calculate.IMD.prob.distribution Source code Source code
calculateIRLs Man page Source code
calculateIRLs_MLE Man page Source code
calculateIRLs_jointMLE Man page Source code
calculateIRLs_norm Man page Source code
calculatePercentFacing Man page Source code
compareSampleGroups Man page Source code
dbCreateRepeatsTable Man page Source code
downloadSatellog Man page Source code
edgeRAnalysis Man page Source code
get.facing.probabilities Source code
get.facing.probability Source code
get.flanking.mass.sum Source code
get.flanking.mass.sums Source code
get.flanking.probabilities Source code
getFacing Source code
getFacingLAB Source code
getFlanking Source code
getFullRepeats Source code
getFullRepeatsLAB Source code
getIRLs Source code
getIRLs_norm Source code
localMinima Source code
logLikelihoodOffset Source code
makeDEXSeqTables Man page Source code
makeEdgeRTables Man page Source code
mapATR Man page Source code
mergeSampleData Man page Source code
n.facing Source code
n.flanking Source code
openOutputFileHandle Man page Source code
processLastAlignedBase Man page Source code
updateSatellogCoordinates Man page Source code
writeMergedResults Source code
writeResults Man page Source code
adamstruck/RECD documentation built on June 3, 2017, 1:46 p.m.