FacingVersusFlankingDEseq: FacingVersusFlankingDEseq
In adamstruck/RECD: Repeat Exansion & Contraction Detection
Description
Usage
Arguments
Details
Value
Author(s)
Description
Try to detect repeats that have gotten longer than the
typical inner mate distance
Usage
1
2
FacingVersusFlankingDEseq(facing_file_list,
flanking_file_list, pheno_table, output_file)
Arguments
facing_file_list
list of all .facing sample files
flanking_file_list
list of all .flanking sample
files
pheno_table
ExpressionPlot type pheno table
output_file
path to and name of file to output
results to.
Details
Uses the DESeq package to try and detect differential
read class frequencies (facing versus flanking) between
tumor and normal samples.
Value
TSV file
Author(s)
Adam Struck - Intern
adamstruck/RECD documentation built on May 10, 2019, 5:51 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s)
Description
Try to detect repeats that have gotten longer than the typical inner mate distance
Usage
1 2 | FacingVersusFlankingDEseq(facing_file_list,
flanking_file_list, pheno_table, output_file)
|
Arguments
facing_file_list |
list of all .facing sample files |
flanking_file_list |
list of all .flanking sample files |
pheno_table |
ExpressionPlot type pheno table |
output_file |
path to and name of file to output results to. |
Details
Uses the DESeq package to try and detect differential read class frequencies (facing versus flanking) between tumor and normal samples.
Value
TSV file
Author(s)
Adam Struck - Intern
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.