Files in adamstruck/RECD
Repeat Exansion & Contraction Detection
DESCRIPTION
NAMESPACE
R/DEXSeqAnalysis.R
R/RepeatsInRegion.R
R/calculateIRLs_jointMLE.R
R/calculatePercentFacing.R
R/compareSampleGroups.R
R/dbCreateRepeatsTable.R
R/depreciated_scripts/calculateIRLs.R
R/depreciated_scripts/calculateIRLs_MLE.R
R/depreciated_scripts/calculateIRLs_Norm.R
R/depreciated_scripts/downloadSatellog.R
R/depreciated_scripts/updateSatellogCoordinates.R
R/edgeRAnalysis.R
R/makeDEXSeqTables.R
R/makeEdgeRTables.R
R/mapATR.R
R/mergeSampleData.R
R/openOutputFileHandle.R
R/processLastAlignedBase.R
README.md
analysis/sweaveTemplate.Rnw
data/exampleData.txt
data/exampleDataSubset.R
man/DEXSeqAnalysis.Rd
man/FacingVersusFlanking.Rd
man/FacingVersusFlankingDEseq.Rd
man/RepeatsInRegion.Rd
man/calculateIRLs.Rd
man/calculateIRLs_MLE.Rd
man/calculateIRLs_jointMLE.Rd
man/calculateIRLs_norm.Rd
man/calculatePercentFacing.Rd
man/compareSampleGroups.Rd
man/dbCreateRepeatsTable.Rd
man/downloadSatellog.Rd
man/edgeRAnalysis.Rd
man/makeDEXSeqTables.Rd
man/makeEdgeRTables.Rd
man/mapATR.Rd
man/mergeSampleData.Rd
man/openOutputFileHandle.Rd
man/processLastAlignedBase.Rd
man/updateSatellogCoordinates.Rd
man/writeResults.Rd
python_exec/getIMDs_DNA.py
python_exec/getIMDs_RNA.py
python_exec/getIMDstatsFromMISO.py
python_exec/getInnerMateDistances_DNAseq.py
python_exec/getInnerMateDistances_RNAseq.py
python_exec/gmon.out
python_exec/makeAlignmentReports.py
python_exec/makeReports.py
python_exec/parseTRFoutput.py
