updateSatellogCoordinates: updateSatellogCoordinates
In adamstruck/RECD: Repeat Exansion & Contraction Detection
Description
Usage
Arguments
Details
Value
Author(s)
Description
Updates all of the genomic coordinates in the repeats
table of your Satellog database to the current hg19
build.
Usage
1
updateSatellogCoordinates(con, con2, exe.path = "./")
Arguments
con
MySQL database connection
con2
SQLite database connection
exe.path
location of the liftOver executable and
chain files
Details
Since Satellog was developed using hg16 v34 of the human
genome, this package updates the coordinates to the most
recent hg19 build using the liftOver tool from UCSC.
Updated coordinates are inserted into SQLite database
Value
SQLite database
Author(s)
Adam Struck
adamstruck/RECD documentation built on May 10, 2019, 5:51 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s)
Description
Updates all of the genomic coordinates in the repeats table of your Satellog database to the current hg19 build.
Usage
1 | updateSatellogCoordinates(con, con2, exe.path = "./")
|
Arguments
con |
MySQL database connection |
con2 |
SQLite database connection |
exe.path |
location of the liftOver executable and chain files |
Details
Since Satellog was developed using hg16 v34 of the human genome, this package updates the coordinates to the most recent hg19 build using the liftOver tool from UCSC. Updated coordinates are inserted into SQLite database
Value
SQLite database
Author(s)
Adam Struck
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.