makeEdgeRTables: makeEdgeRTables
In adamstruck/RECD: Repeat Exansion & Contraction Detection
Description
Usage
Arguments
Value
Author(s)
Description
Creates the necessary counts and design tables for
running edgeR.
Usage
1
2
3
makeEdgeRTables(facing_file_list, flanking_file_list,
pheno_table, min_total_counts = 50, output_dir = "~",
prefix)
Arguments
facing_file_list
list of all .facing sample files
flanking_file_list
list of all .flanking sample
files
pheno_table
ExpressionPlot type pheno table
min_total_counts
miniumum total number of read
pairs associated with a given repeat across all samples
output_dir
path to and name of file to output
results to.
Value
TSV file
Author(s)
Adam Struck - Intern
adamstruck/RECD documentation built on May 10, 2019, 5:51 a.m.
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Description Usage Arguments Value Author(s)
Description
Creates the necessary counts and design tables for running edgeR.
Usage
1 2 3 | makeEdgeRTables(facing_file_list, flanking_file_list,
pheno_table, min_total_counts = 50, output_dir = "~",
prefix)
|
Arguments
facing_file_list |
list of all .facing sample files |
flanking_file_list |
list of all .flanking sample files |
pheno_table |
ExpressionPlot type pheno table |
min_total_counts |
miniumum total number of read pairs associated with a given repeat across all samples |
output_dir |
path to and name of file to output results to. |
Value
TSV file
Author(s)
Adam Struck - Intern
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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