calculateIRLs | calculateIRLs |
calculateIRLs_jointMLE | calculateIRLs_MLE |
calculateIRLs_MLE | calculateIRLs_MLE |
calculateIRLs_norm | calculateIRLs_norm |
calculatePercentFacing | calculatePercentFacing |
compareSampleGroups | compareSampleGroups |
dbCreateRepeatsTable | dbCreateRepeatsTable |
DEXSeqAnalysis | DEXSeqAnalysis |
downloadSatellog | downloadSatellog |
edgeRAnalysis | edgeRAnalysis |
FacingVersusFlanking | FacingVersusFlanking |
FacingVersusFlankingDEseq | FacingVersusFlankingDEseq |
makeDEXSeqTables | makeDEXSeqTables |
makeEdgeRTables | makeEdgeRTables |
mapATR | mapATR [mapAlignmentsToRepeats] |
mergeSampleData | mergeSampleData |
openOutputFileHandle | openOutputFileHandle |
processLastAlignedBase | processLastAlignedBase |
RepeatsInRegion | RepeatsInRegion |
updateSatellogCoordinates | updateSatellogCoordinates |
writeResults | writeResults |
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