compare_RF_to_SSP: Print quick comparison stats on the consensus between the RF...

In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data

Print quick comparison stats on the consensus between the RF and SSP classifiers This function uses the results of subtypeCMS.RF and subtypeCMS.SSP

Description

Print quick comparison stats on the consensus between the RF and SSP classifiers This function uses the results of subtypeCMS.RF and subtypeCMS.SSP

Usage

compare_RF_to_SSP(resRF, resSSP)

Arguments

resRF	- the results data frame output of subtypeCMS.RF
resSSP	- the results data frame output of subtypeCMS.SSP

Value

table (data.frame) of samples that disagree in assignment with their subtype and probabilities of assignment

Examples

mat = get_TCGA_synapse()
resRF = subtypeCMS.RF(mat)
resSSP = subtypeCMS.SSP(mat)
compare_RF_to_SSP(resRF, resSSP)

aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.