load_schlicker_signature: Loading the Schlicker (iNMF) subtype signatures from the...
In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data
View source: R/load_signatures.R
load_schlicker_signature R Documentation
Loading the Schlicker (iNMF) subtype signatures from the paper supplement.
Description
Reference: Schlicker et al (2012). Subtypes of primary colorectal tumors correlate with response to targeted
treatment in colorectal cell lines. BMC Medical Genomics, 5(1), 66. doi:10.1186/1755-8794-5-66.
Usage
load_schlicker_signature(annotation = "symbol")
Arguments
annotation
(character), can be gene 'symbol' or 'entrez' identifier; default is 'symbol'
Value
a list of signatures
Source
goo.gl/fghKBY,goo.gl/vCzAwf, goo.gl/C5FpoE, goo.gl/uwABi1,
goo.gl/pvzt33, goo.gl/b1eGqo, goo.gl/S6UhM3
See Also
load_sadanandam_signature and load_CMS_genes
Examples
sig = load_schlicker_signature()
print(sig$'1.1')
aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.
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View source: R/load_signatures.R
| load_schlicker_signature | R Documentation |
Loading the Schlicker (iNMF) subtype signatures from the paper supplement.
Description
Reference: Schlicker et al (2012). Subtypes of primary colorectal tumors correlate with response to targeted treatment in colorectal cell lines. BMC Medical Genomics, 5(1), 66. doi:10.1186/1755-8794-5-66.
Usage
load_schlicker_signature(annotation = "symbol")
Arguments
annotation |
(character), can be gene 'symbol' or 'entrez' identifier; default is 'symbol' |
Value
a list of signatures
Source
goo.gl/fghKBY,goo.gl/vCzAwf, goo.gl/C5FpoE, goo.gl/uwABi1, goo.gl/pvzt33, goo.gl/b1eGqo, goo.gl/S6UhM3
See Also
load_sadanandam_signature and load_CMS_genes
Examples
sig = load_schlicker_signature() print(sig$'1.1')
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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