subtypeCMS.RF: Applying the random forest classifier of the CMS consortium...
In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data
View source: R/subtyping_tools_CMS.R
subtypeCMS.RF R Documentation
Applying the random forest classifier of the CMS consortium (CMSclassifier::classifyCMS.RF)
Installing the CMS classifier: "library(devtools); install_github("Sage-Bionetworks/CMSclassifier")"
Description
Applying the random forest classifier of the CMS consortium (CMSclassifier::classifyCMS.RF)
Installing the CMS classifier: "library(devtools); install_github("Sage-Bionetworks/CMSclassifier")"
Usage
subtypeCMS.RF(mat)
Arguments
mat
- the matrix to be subtyped, genes by samples, genes are typically represented as gene symbols
Value
- table of subtype information, columns are predicted CMS,
nearest CMS and posterior probabilities of CMS assignment;
rownames are samples
Examples
mat = get_TCGA_synapse()
res = subtypeCMS.RF(mat)
aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.
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View source: R/subtyping_tools_CMS.R
| subtypeCMS.RF | R Documentation |
Applying the random forest classifier of the CMS consortium (CMSclassifier::classifyCMS.RF) Installing the CMS classifier: "library(devtools); install_github("Sage-Bionetworks/CMSclassifier")"
Description
Applying the random forest classifier of the CMS consortium (CMSclassifier::classifyCMS.RF) Installing the CMS classifier: "library(devtools); install_github("Sage-Bionetworks/CMSclassifier")"
Usage
subtypeCMS.RF(mat)
Arguments
mat |
- the matrix to be subtyped, genes by samples, genes are typically represented as gene symbols |
Value
- table of subtype information, columns are predicted CMS, nearest CMS and posterior probabilities of CMS assignment; rownames are samples
Examples
mat = get_TCGA_synapse() res = subtypeCMS.RF(mat)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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