get_TCGA_synapse: Download the merged (Illumina -HiSeq and -GA ) TCGA...
In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data
get_TCGA_synapse R Documentation
Download the merged (Illumina -HiSeq and -GA ) TCGA expression data from Synapse.
Note 1: synapse ID "syn2325328"
Note 2: requires synapse login, can be automated by creating a .synapseConfig file.
Description
Download the merged (Illumina -HiSeq and -GA ) TCGA expression data from Synapse.
Note 1: synapse ID "syn2325328"
Note 2: requires synapse login, can be automated by creating a .synapseConfig file.
Usage
get_TCGA_synapse()
Arguments
no
parameters
Value
data frame of the expression data, genes are rownames, samples as colnames
See Also
get_synapse_table
Examples
tcga_expr = get_TCGA_synapse()
print(dim(tcga_expr))
print(tcga_expr[1:3,1:4])
aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.
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| get_TCGA_synapse | R Documentation |
Download the merged (Illumina -HiSeq and -GA ) TCGA expression data from Synapse. Note 1: synapse ID "syn2325328" Note 2: requires synapse login, can be automated by creating a .synapseConfig file.
Description
Download the merged (Illumina -HiSeq and -GA ) TCGA expression data from Synapse. Note 1: synapse ID "syn2325328" Note 2: requires synapse login, can be automated by creating a .synapseConfig file.
Usage
get_TCGA_synapse()
Arguments
no |
parameters |
Value
data frame of the expression data, genes are rownames, samples as colnames
See Also
get_synapse_table
Examples
tcga_expr = get_TCGA_synapse() print(dim(tcga_expr)) print(tcga_expr[1:3,1:4])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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