plotSubtypesCMS.RF: Visualization of the results of subtypeCMS.RF(). Creates...
In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data
plotSubtypesCMS.RF R Documentation
Visualization of the results of subtypeCMS.RF().
Creates barplot of posterior probabilities per sample.
Also plots a heatmap of the expression of the random forest genes, using all samples.
(This part has to be re-implemented. Pending on the multiFactorHeatmap rewrite.)
Description
Visualization of the results of subtypeCMS.RF().
Creates barplot of posterior probabilities per sample.
Also plots a heatmap of the expression of the random forest genes, using all samples.
(This part has to be re-implemented. Pending on the multiFactorHeatmap rewrite.)
Usage
plotSubtypesCMS.RF(
res,
orderBy = c("CMS4", "CMS1", "CMS2", "CMS3"),
names = NULL
)
Arguments
res
- the result of subtypeCMS.RF()
Value
barplot of the posterior probabilities for all samples
Examples
mat = get_TCGA_synapse()
res = subtypeCMS.RF(mat)
plotSubtypesCMS.RF(res)
aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| plotSubtypesCMS.RF | R Documentation |
Visualization of the results of subtypeCMS.RF(). Creates barplot of posterior probabilities per sample. Also plots a heatmap of the expression of the random forest genes, using all samples. (This part has to be re-implemented. Pending on the multiFactorHeatmap rewrite.)
Description
Visualization of the results of subtypeCMS.RF(). Creates barplot of posterior probabilities per sample. Also plots a heatmap of the expression of the random forest genes, using all samples. (This part has to be re-implemented. Pending on the multiFactorHeatmap rewrite.)
Usage
plotSubtypesCMS.RF(
res,
orderBy = c("CMS4", "CMS1", "CMS2", "CMS3"),
names = NULL
)
Arguments
res |
- the result of subtypeCMS.RF() |
Value
barplot of the posterior probabilities for all samples
Examples
mat = get_TCGA_synapse() res = subtypeCMS.RF(mat) plotSubtypesCMS.RF(res)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.