get_synapse_table: This functions shows how to download data from Synapse. The...
In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data
get_synapse_table R Documentation
This functions shows how to download data from Synapse.
The example is tailored to table-format data: an expression matrix
Note: requires synapse login, can be automated by creating a .synapseConfig file
with the following contents:
[authentication]
username: username
password: password
Description
This functions shows how to download data from Synapse.
The example is tailored to table-format data: an expression matrix
Note: requires synapse login, can be automated by creating a .synapseConfig file
with the following contents:
[authentication]
username: username
password: password
Usage
get_synapse_table(synapseID, sep = "tab")
Arguments
synapseID
- the synapse identifier associated with that dataset
sep
- the table separator, ex: tab, comma; default is tab
Value
data frame of the requested dataset
See Also
get_GSE33113_synapse
Examples
tab = get_synapse_table('syn2363559')
print(tab[1:5,1:3])
aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.
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| get_synapse_table | R Documentation |
This functions shows how to download data from Synapse. The example is tailored to table-format data: an expression matrix Note: requires synapse login, can be automated by creating a .synapseConfig file with the following contents: [authentication] username: username password: password
Description
This functions shows how to download data from Synapse. The example is tailored to table-format data: an expression matrix Note: requires synapse login, can be automated by creating a .synapseConfig file with the following contents: [authentication] username: username password: password
Usage
get_synapse_table(synapseID, sep = "tab")
Arguments
synapseID |
- the synapse identifier associated with that dataset |
sep |
- the table separator, ex: tab, comma; default is tab |
Value
data frame of the requested dataset
See Also
get_GSE33113_synapse
Examples
tab = get_synapse_table('syn2363559')
print(tab[1:5,1:3])
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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