load_CMS_genes: Load random-forest genes from CMS classifier, stored in...
In aeolianine/CRCsubtyping: Subtyping Colorectal Expression Data
View source: R/load_signatures.R
load_CMS_genes R Documentation
Load random-forest genes from CMS classifier,
stored in CMSclassifier::finalModel$importance, with their entrez identifiers
Description
Load random-forest genes from CMS classifier,
stored in CMSclassifier::finalModel$importance, with their entrez identifiers
Usage
load_CMS_genes(geneSymbol = FALSE)
Arguments
geneSymbol,
boolean: should entrez identifiers be converted to gene symbols; default is FALSE
Value
a matrix with CMS genes as rownames, and random forest importance scores per subtype;
this is basically "CMSclassifier::finalModel$importance", with row names converted to
gene symbols if geneSymbol=TRUE
See Also
load_schlicker_signature and load_sadanandam_signature
Examples
mat = load_CMS_genes(geneSymbol=FALSE)
print(head(mat))
aeolianine/CRCsubtyping documentation built on Jan. 13, 2023, 12:16 p.m.
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View source: R/load_signatures.R
| load_CMS_genes | R Documentation |
Load random-forest genes from CMS classifier, stored in CMSclassifier::finalModel$importance, with their entrez identifiers
Description
Load random-forest genes from CMS classifier, stored in CMSclassifier::finalModel$importance, with their entrez identifiers
Usage
load_CMS_genes(geneSymbol = FALSE)
Arguments
geneSymbol, |
boolean: should entrez identifiers be converted to gene symbols; default is FALSE |
Value
a matrix with CMS genes as rownames, and random forest importance scores per subtype; this is basically "CMSclassifier::finalModel$importance", with row names converted to gene symbols if geneSymbol=TRUE
See Also
load_schlicker_signature and load_sadanandam_signature
Examples
mat = load_CMS_genes(geneSymbol=FALSE) print(head(mat))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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