add_annotated_clustering: add_annotated_clustering

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

add_annotated_clustering

Description

Add the given clusters in the given group column attribute and meta data related to the given clustering to the given .loom file handler.

Usage

add_annotated_clustering(
  loom,
  group,
  name,
  clusters,
  annotation,
  is.default = F,
  overwrite.default = NULL
)

Arguments

loom	The loom file handler.
group	The for the given clustering group to which the given clusters have to be added.
name	The name given to this clustering
clusters	A named list of the cell id and assigned the cluster id.
annotation	A named list of the cell id and the corresponding annotation.
is.default	Set this clustering be set as default one.
overwrite.default	Overwrite the default clustering in the given loom if set to TRUE. Otherwise, it's not updated.

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.