add_annotation_by_cluster_annotation_mapping_df: add_annotation_by_cluster_annotation_mapping_df

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

add_annotation_by_cluster_annotation_mapping_df

Description

Add annotation as column attribute using cluster annotation mapping data.frame

Usage

add_annotation_by_cluster_annotation_mapping_df(
  loom,
  key,
  clustering.name,
  annotation.df = NULL,
  annotation.df.cluster.id.column.name = NULL,
  annotation.df.annotation.column.name = NULL
)

Arguments

loom	The loom file handler.
key	The name of the annotation
clustering.name	The name of the clustering.
annotation.df	The data.frame containing the cluster annotatiion mapping
annotation.df.cluster.id.column.name	The column name of the given annotation.df containing the cluster ID values
annotation.df.annotation.column.name	The column name of the given annotation.df containing the annotation values.

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.