add_regulons_AUC: add_regulons_AUC

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

add_regulons_AUC

Description

Add the regulons AUC matrix generated by SCENIC as a column attribute to the given .loom file handler.

Usage

add_regulons_AUC(loom, regulons.AUC, column.attr.name = "MotifRegulonsAUC")

Arguments

loom	The loom file handler.
regulons.AUC	A matrix of the regulons AUC values with M regulons as rows and N cells as columns.
column.attr.name	Type of regulon to retrieve; Usually 'MotifRegulonsAUC' for motif-based regulons, or 'TrackRegulonsAUC' for track-based (e.g. ChIP-seq) regulons. (Might change according to the SCENIC/pySCENIC pipeline version and settings used).

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.