get_cell_annotation: get_cell_annotation
In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.
get_cell_annotation R Documentation
get_cell_annotation
Description
Get cell annotations from the given loom file
Usage
get_cell_annotation(loom, annotations.columns = NULL)
Arguments
loom
.loom file name
Value
data.frame containing the cell annotations in the given loom (cells as rows, annotation variables as columns).
Examples
loomPath <- file.path(system.file('extdata', package='SCopeLoomR'), "example.loom")
loom <- open_loom(loomPath)
cell_annotations <- get_cell_annotation(loom)
head(cellAnnots)
aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.
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| get_cell_annotation | R Documentation |
get_cell_annotation
Description
Get cell annotations from the given loom file
Usage
get_cell_annotation(loom, annotations.columns = NULL)
Arguments
loom |
.loom file name |
Value
data.frame containing the cell annotations in the given loom (cells as rows, annotation variables as columns).
Examples
loomPath <- file.path(system.file('extdata', package='SCopeLoomR'), "example.loom")
loom <- open_loom(loomPath)
cell_annotations <- get_cell_annotation(loom)
head(cellAnnots)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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