get_cluster_dgem_by_name: get_cluster_dgem_by_name

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

get_cluster_dgem_by_name

Description

Get a subset of the digital gene expression matrix containing only the cells in the cluster annotated by the given cluster.name.

Get a subset of the digital gene expression matrix containing only the cells in the cluster annotated by the given cluster.name.

Usage

get_cluster_dgem_by_name(loom, cluster.name)

get_cluster_dgem_by_name(loom, cluster.name)

Arguments

loom	The loom file handler.
cluster.name	The name/description of the cluster.

Value

A N-by-M matrix containing the gene expression levels of the cells in the cluster annotated by the given cluster.name. N represents the genes and M the cells.

A N-by-M matrix containing the gene expression levels of the cells in the cluster annotated by the given cluster.name. N represents the genes and M the cells.

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.