add_clustering_markers: add_clustering_markers

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

add_clustering_markers

Description

Add the clustering markers as a row attribute to the given .loom file handler.

Usage

add_clustering_markers(
  loom,
  clustering.id,
  clustering.markers,
  marker.metric.accessors = NULL,
  marker.metric.names = NULL,
  marker.metric.descriptions = NULL
)

Arguments

loom	The loom file handler.
clustering.id	The clustering id that the given clustering.markers are specific for.
clustering.markers	A list of markers of each cluster found for the given clustering.id.
marker.metric.accessors	A list of the column names of the metrics to extract from the cluster marker data.frame in the given clustering.markers.
marker.metric.names	A list of names to attribute to the given marker.metric.accessor.
marker.metric.descriptions	A list of description to attribute to the given marker.metric.accessor.
dgem	A matrix of the gene expression with M genes as rows and N cells as columns.

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.