add_regulons: add_regulons

In aertslab/SCopeLoomR: Build .loom files (compatible with SCope) and extract data from .loom files.

add_regulons

Description

Add the regulons with their target genes generated by SCENIC as a row attribute to the given .loom file handler.

Usage

add_regulons(
  loom,
  regulons,
  column.attr.name = "MotifRegulons",
  regulon.threshold.assignments = NULL,
  regulon.enrichment.table = NULL
)

Arguments

loom	The loom file handler.
regulons	A list of list of the regulons and their target genes generated by SCENIC. #'@param column.attr.name Type of regulon to retrieve; Usually 'MotifRegulons' for motif-based regulons, or 'TrackRegulons' for track-based (e.g. ChIP-seq) regulons. (Might change according to the SCENIC/pySCENIC pipeline version and settings used).
regulon.threshold.assignments	The automated regulon cell assignments object generated by SCENIC.
regulon.enrichment.table	The regulon enrichment table generated by SCENIC.

aertslab/SCopeLoomR documentation built on April 19, 2022, 11:25 a.m.