Global functions | |
---|---|
AssessBBDPCRun | Man page Source code |
AssessBBDPCRun_B | Man page Source code |
AssessBBDPCRun_afterpeakcalling | Man page Source code |
CNAsDriversComplexHeatmap | Man page Source code |
CNAsDriversHeatmapDendrogram | Man page Source code |
CleanBedopsOutput | Man page Source code |
CodeSegments | Man page Source code |
CodeSegments_test | Man page Source code |
CollateSubclones | Man page Source code |
ComputePeaksVAF | Man page Source code |
ComputePeaksVAF_nf | Man page Source code |
ConvertImputeInputToBeagleInput.Rd | Man page |
ConvertSubclones | Source code |
ConvertSubclonesSingleSample | Man page |
CreateScriptsDirs | Man page Man page Source code |
CreateScriptsDirsBeagle | Man page |
CreateScriptsDirsFixedParams | Man page Source code |
CreateWGDScriptDirs | Man page |
CreateWGDrun | Source code |
GenerateDPinput | Man page Source code Source code |
GenerateDPinput_mutect_vcf | Man page Source code |
GenerateDPinput_strelka_vcf | Man page Source code |
GenerateDPinput_t2BamAC | Man page Man page |
GenerateDPinputt2BamAC | Source code |
GenerateDPinputt2BamAC_Beagle | Source code |
GenerateDPinputt2BamAC_Beagle_nf | Man page Man page Source code |
GenomewideStackedBar | Man page Source code |
GenomewideStackedBarPlot | Man page Source code |
LabelGenomecov | Man page Source code |
PassFail | Man page Source code |
PrepDataForSummary | Man page |
PrepShapeIt2 | Man page Source code |
QualityControl_CNAqc | Man page |
RunBeagle5 | Man page |
RunDPClust | Man page Source code |
RunDPClust_Beagle_nf | Man page Source code |
RunShapeIt2 | Man page |
SetUpRun2BBDPC | Man page Source code |
WriteBeagleAsImpute | Man page |
call.peaks | Man page Source code |
compute.expected.peak.loc | Man page |
computed.expected.peak.loc | Source code |
convert.impute.input.to.beagle.input | Source code |
estimate.dpclust.purity | Source code Source code |
estimate.new.ploidy | Source code Source code |
get.worst.filter | Source code Source code |
larger.all.later.numbers | Source code Source code |
log.message | Source code Source code |
pastedot | Source code Source code |
pasteu | Source code Source code |
prepDataForSummary | Man page Source code |
qc | Source code |
qc_CNAqc | Source code |
read.segs | Man page Source code |
read.snvs | Man page Source code |
reestimate.purity | Man page Source code |
run.beagle5 | Source code |
switch.ploidy.get.ploidy | Source code Source code |
switch.ploidy.get.purity | Source code Source code |
writebeagle.as.impute | Source code |
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