CleanBedopsOutput: Clean bedops output
In afrangou/CleanCNA: Calling and recalling subclonal copy number using SNP and SNV information to provide a high quality set of copy number profiles.
Description
Usage
Arguments
Value
View source: R/CleanBedopsOutput.R
Description
Cleans output from bedops which leaves segments spanning whole chrs which screw up downstream steps
Usage
1
CleanBedopsOutput(filestub, segfile_name)
Arguments
filestub
= dir (with trailling slash) containing *_bedops
segfile_name = label of cohort, eg 'TGCT'
Value
Clean version of bedops file
afrangou/CleanCNA documentation built on Dec. 28, 2021, 8:21 p.m.
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Description Usage Arguments Value
View source: R/CleanBedopsOutput.R
Description
Cleans output from bedops which leaves segments spanning whole chrs which screw up downstream steps
Usage
1 | CleanBedopsOutput(filestub, segfile_name)
|
Arguments
filestub |
= dir (with trailling slash) containing *_bedops segfile_name = label of cohort, eg 'TGCT' |
Value
Clean version of bedops file
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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