CNAsDriversHeatmapDendrogram: Heatmap to show CNA status in a set of driver genes across a...
In afrangou/CleanCNA: Calling and recalling subclonal copy number using SNP and SNV information to provide a high quality set of copy number profiles.
Description
Usage
Arguments
Value
View source: R/CNAsDriversHeatmap.R
Description
Create heatmap showing CNA status at driver genes using ggplot2
homdel, loh, otherloss, nochange, gain, biggain
Usage
1
CNAsDriversHeatmapDendrogram(segfile_dir, segfile_name, bed_file, driver_file)
Arguments
segfile_dir
= dir with all *_subclones.txt files are
segfile_name = label of cohort, eg 'TGCT'
bed_file = tab sep file, 7 cols, chr,start,end,strand,ens,ens,genename
driver_file = tab sep file, colnames SYMBOL (of gene) and TIER (1,2,etc) existing
Value
Heatmap and associated dendrogram (in same order) of CNAs v drivers
afrangou/CleanCNA documentation built on Dec. 28, 2021, 8:21 p.m.
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Description Usage Arguments Value
View source: R/CNAsDriversHeatmap.R
Description
Create heatmap showing CNA status at driver genes using ggplot2 homdel, loh, otherloss, nochange, gain, biggain
Usage
1 | CNAsDriversHeatmapDendrogram(segfile_dir, segfile_name, bed_file, driver_file)
|
Arguments
segfile_dir |
= dir with all *_subclones.txt files are segfile_name = label of cohort, eg 'TGCT' bed_file = tab sep file, 7 cols, chr,start,end,strand,ens,ens,genename driver_file = tab sep file, colnames SYMBOL (of gene) and TIER (1,2,etc) existing |
Value
Heatmap and associated dendrogram (in same order) of CNAs v drivers
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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