LabelGenomecov: Collate all segments in all samples in the cohort
In afrangou/CleanCNA: Calling and recalling subclonal copy number using SNP and SNV information to provide a high quality set of copy number profiles.
Description
Usage
Arguments
Value
View source: R/LabelGenomecov.R
Description
Label bedtools_genomecov files with type of CNA
Usage
1
LabelGenomecov(filestub, segfile_name)
Arguments
filestub
= dir (with trailling slash) containing *regions_normalised_out files for all cna types
segfile_name = label of cohort, eg 'TGCT'
Value
writes same name file with cna types labelled
afrangou/CleanCNA documentation built on Dec. 28, 2021, 8:21 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/LabelGenomecov.R
Description
Label bedtools_genomecov files with type of CNA
Usage
1 | LabelGenomecov(filestub, segfile_name)
|
Arguments
filestub |
= dir (with trailling slash) containing *regions_normalised_out files for all cna types segfile_name = label of cohort, eg 'TGCT' |
Value
writes same name file with cna types labelled
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.