CNAsDriversComplexHeatmap: Heatmap to show CNA status in a set of driver genes across a...
In afrangou/CleanCNA: Calling and recalling subclonal copy number using SNP and SNV information to provide a high quality set of copy number profiles.
Description
Usage
Arguments
Value
View source: R/CNAsDriversComplexHeatmap.R
Description
Create heatmap showing CNA status at driver genes using complexheatmap
homdel, loh, otherloss, nochange, gain, biggain
with various bars down the side
for bars down side, feed vectors to function
Usage
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CNAsDriversComplexHeatmap(
segfile_dir,
segfile_name,
plot_name,
bed_file,
driver_file,
tomelt
)
Arguments
segfile_dir
= dir with all *_subclones.txt files are
segfile_name = label of cohort, eg 'TGCT'
plot_name = name for plot
tomelt = saved from CNAsDriversHeatmap function
bed_file =
driver_file = tab sep file, colnames SYMBOL (of gene) and TIER (1,2,etc) existing
Value
Heatmap, dendrogram of CNAs v drivers, with classifying bars
afrangou/CleanCNA documentation built on Dec. 28, 2021, 8:21 p.m.
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Description Usage Arguments Value
View source: R/CNAsDriversComplexHeatmap.R
Description
Create heatmap showing CNA status at driver genes using complexheatmap homdel, loh, otherloss, nochange, gain, biggain with various bars down the side for bars down side, feed vectors to function
Usage
1 2 3 4 5 6 7 8 | CNAsDriversComplexHeatmap(
segfile_dir,
segfile_name,
plot_name,
bed_file,
driver_file,
tomelt
)
|
Arguments
segfile_dir |
= dir with all *_subclones.txt files are segfile_name = label of cohort, eg 'TGCT' plot_name = name for plot tomelt = saved from CNAsDriversHeatmap function bed_file = driver_file = tab sep file, colnames SYMBOL (of gene) and TIER (1,2,etc) existing |
Value
Heatmap, dendrogram of CNAs v drivers, with classifying bars
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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