GenomewideStackedBar: Prep data for genome wide stacked barplot Create stacked bar...
In afrangou/CleanCNA: Calling and recalling subclonal copy number using SNP and SNV information to provide a high quality set of copy number profiles.
Description
Usage
Arguments
Value
View source: R/GenomewideStackedBar.R
Description
Take output from bedtools intersect and prepare data for stacked barplot
Create stacked barplot for 6 different CNA types
homdel, loh, otherloss, nochange, gain, biggain
Usage
1
GenomewideStackedBar(filestub, segfile_name)
Arguments
filestub
= dir (with trailling slash) containing *_partitioned_regions_all_CNA_types_overlapped.out files for all cna types
segfile_name = label of cohort, eg 'TGCT'
Value
Prepped data
Stacked barplot
afrangou/CleanCNA documentation built on Dec. 28, 2021, 8:21 p.m.
R Package Documentation
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Description Usage Arguments Value
View source: R/GenomewideStackedBar.R
Description
Take output from bedtools intersect and prepare data for stacked barplot Create stacked barplot for 6 different CNA types homdel, loh, otherloss, nochange, gain, biggain
Usage
1 | GenomewideStackedBar(filestub, segfile_name)
|
Arguments
filestub |
= dir (with trailling slash) containing *_partitioned_regions_all_CNA_types_overlapped.out files for all cna types segfile_name = label of cohort, eg 'TGCT' |
Value
Prepped data Stacked barplot
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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