API for akdess/CaSpER
Identify large-scale CNV events from single cell or bulk RNA-Seq data
| Global functions | |
|---|---|
| AverageReference | Man page Source code |
| CaSpER-package | Man page |
| CenterSmooth | Man page Source code |
| ControlNormalize | Man page Source code |
| CreateCasperObject | Man page Source code |
| HMMsegment | Source code |
| PerformMeanFilterByChr | Source code |
| PerformMedianFilter | Man page Source code |
| PerformMedianFilterByChr | Man page Source code |
| PerformSegmentationWithHMM | Man page Source code |
| ProcessData | Man page Source code |
| _PACKAGE | Man page |
| assignStates | Man page Source code |
| calcROC | Man page Source code |
| calculateLOHShiftsForEachSegment | Man page Source code |
| casper | Man page |
| casper-class | Man page |
| dirichletpdf | Source code |
| draw_colnames_45 | Source code |
| draw_matrix2 | Source code |
| estimateTNoiseParamsMap | Source code |
| extractEvents | Man page Source code |
| extractLargeScaleEvents | Man page Source code |
| extractMUAndCooccurence | Man page Source code |
| extractSegmentSummary | Man page Source code |
| gene.matrix | Man page Source code |
| generateAnnotation | Man page Source code |
| generateEnrichmentSummary | Man page Source code |
| generateLargeScaleEvents | Man page Source code |
| generateParam | Man page Source code |
| getDiffExprGenes | Man page Source code |
| goEnrichmentBP | Man page |
| hello | Man page |
| lohCallMedianFilter | Man page Source code |
| lohCallMedianFilterByChr | Man page Source code |
| manualSegment | Source code |
| mergeScalesAndGenerateFinalEventSummary | Man page Source code |
| normalize | Source code |
| plotBAFAllSamples | Man page Source code |
| plotBAFInSeperatePages | Man page Source code |
| plotBAFOneSample | Man page Source code |
| plotGEAllSamples | Man page Source code |
| plotGEAndBAFOneSample | Man page Source code |
| plotGEAndGT | Man page Source code |
| plotHeatmap | Man page Source code |
| plotHeatmap10x | Source code |
| plotLargeScaleEvent | Man page Source code |
| plotLargeScaleEvent2 | Man page Source code |
| plotMUAndCooccurence | Man page Source code |
| plotSCellCNVTree | Man page Source code |
| plotSingleCellLargeScaleEventHeatmap | Man page Source code |
| processSegments | Source code |
| readBAFExtractOutput | Man page Source code |
| runCaSpER | Man page Source code |
| splitByOverlap | Man page Source code |
| tdistPDF | Source code |
