API for akoyabio/phenoptrReports
Create reports using Phenoptics data
| Global functions | |
|---|---|
| add_tissue_category_totals | Source code |
| addin_10_merge | Man page Source code |
| addin_20_consolidate | Man page Source code |
| addin_30_analysis_app | Man page Source code |
| addin_35_spatial_map_viewer | Man page Source code |
| addin_40_unmixing_quality | Man page Source code |
| addin_50_component_levels | Man page Source code |
| addin_60_mean_of_top_and_bottom_cells | Man page Source code |
| addin_70_staining_consistency_report | Man page Source code |
| cc_and | Source code |
| check_phenotypes | Source code |
| choose_directory | Man page Source code |
| choose_files | Man page Source code |
| cleanup_code | Source code |
| component_levels_report | Man page Source code |
| component_ridge_plot | Source code |
| compute_density_from_cell_summary | Man page Source code |
| compute_density_from_table | Man page Source code |
| compute_h_score | Man page Source code |
| compute_h_score_from_score_data | Man page Source code |
| compute_mean_expression | Man page Source code |
| compute_mean_expression_many | Man page Source code |
| compute_positivity | Man page Source code |
| compute_positivity_many | Man page Source code |
| consolidate_and_summarize_cell_seg_data | Man page Source code |
| count_phenotypes | Man page Source code |
| count_within_summary | Man page Source code |
| count_within_summary_impl | Source code |
| counts_to_percents | Man page Source code |
| create_empty_dir | Source code |
| discrete_colors | Man page Source code |
| distance_column_name | Source code |
| ensure_distance_columns | Source code |
| ensure_tissue_category_area | Source code |
| escapeRegex | Source code |
| escape_markdown | Source code |
| escape_path | Source code |
| favicon | Source code |
| file_to_fluor | Source code |
| find_common_prefix | Source code |
| fluor_ridge_plot | Source code |
| format_all | Source code |
| format_cleanup | Source code |
| format_count_within | Source code |
| format_density | Source code |
| format_expression | Source code |
| format_h_score | Source code |
| format_header | Source code |
| format_nearest_neighbors | Source code |
| format_path | Source code |
| format_phenotypes | Source code |
| format_tissue_categories | Source code |
| format_trailer | Source code |
| function_exists | Source code |
| get_component_level_data | Source code |
| id_column_name | Source code |
| make_nested | Source code |
| make_unique_names | Source code |
| match_cells | Source code |
| mean_of_top_and_bottom_cells | Man page Source code |
| mean_of_top_and_bottom_cells_report | Man page Source code |
| merge_and_split_phenotypes | Source code |
| merge_cell_seg_files | Man page Source code |
| merge_progress_count | Source code |
| nearest_neighbor_map | Man page Source code |
| nearest_neighbor_summary | Man page Source code |
| nearest_neighbor_summary_single_impl | Source code |
| order_by_slide_and_tissue_category | Man page Source code |
| order_by_slide_phenotype_category | Source code |
| parse_comma_space_values | Source code |
| parse_merge_headers | Source code |
| parse_phenotypes_with_na | Source code |
| parse_tma_columns | Source code |
| process_singleplex_image | Source code |
| quote_or_null_transformer | Source code |
| read_background | Source code |
| spatial_map_viewer | Man page Source code |
| spatial_map_viewer_front_end | Source code |
| split_phenotype_column | Man page Source code |
| split_phenotypes | Man page Source code |
| staining_consistency_report | Man page Source code |
| temp_dir_by | Source code |
| unmixing_quality_report | Man page Source code |
| upset_data | Source code |
| upset_plot | Man page |
| worksheet_code | Source code |
| write_and_style_sheet | Source code |
| write_count_within_sheet | Man page Source code |
| write_counts_sheet | Man page Source code |
| write_density_sheet | Man page Source code |
| write_expression_sheet | Man page Source code |
| write_h_score_sheet | Man page Source code |
| write_mean_of_top_and_bottom_charts | Man page Source code |
| write_nearest_neighbor_summary_sheet | Man page Source code |
| write_percents_sheet | Man page Source code |
| write_plot_sheet | Man page Source code |
| write_session_info | Man page Source code |
| write_sheet | Man page Source code |
| write_summary_charts | Man page Source code |
| write_summary_report | Man page Source code |
| write_summary_sheet | Man page Source code |
