al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results
Version 1.7.5

methylKit is an R package for DNA methylation analysis and annotation from high-throughput bisulfite sequencing. The package is designed to deal with sequencing data from RRBS and its variants, but also target-capture methods and whole genome bisulfite sequencing. It also has functions to analyze base-pair resolution 5hmC data from experimental protocols such as oxBS-Seq and TAB-Seq. Perl is needed to read SAM files only.

Getting started

Package details

AuthorAltuna Akalin [aut, cre], Matthias Kormaksson [aut], Sheng Li [aut], Arsene Wabo [ctb], Adrian Bierling [aut], Alexander Gosdschan [aut]
Bioconductor views DNAMethylation MethylSeq Sequencing
MaintainerAltuna Akalin <[email protected]>, Alexander Gosdschan <[email protected]>
LicenseArtistic-2.0
Version1.7.5
URL http://code.google.com/p/methylkit/
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("al2na/methylKit")
al2na/methylKit documentation built on July 13, 2018, 12:07 a.m.