methylRawList-class: An S4 class for holding a list of methylRaw objects.

In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

An S4 class for holding a list of methylRaw objects.

Description

This class stores the list of methylRaw objects. Functions such as lapply can be used on this list. It extends list class. This object is primarily produced by methRead function.

Usage

methylRawList(..., treatment)

Arguments

...	vector of methylRaw objects
treatment	vector of treatment values

Slots

treatment

numeric vector denoting control and test samples

.Data

a list of methylRaw objects

Constructor

methylRawList(...)

combine multiple methylRaw objects supplied in ... into a methylRawList object.

Examples

data(methylKit)

#applying functions designed for methylRaw on methylRawList object
lapply(methylRawList.obj,"getAssembly")

al2na/methylKit documentation built on Feb. 1, 2024, 4:42 p.m.