getAssembly-methods: get assembly of the genome

In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

get assembly of the genome

Description

The function returns the genome assembly stored in any of the methylBase,methylBaseDB,methylRaw, methylRawDB,methylDiff objects

Usage

getAssembly(x)

## S4 method for signature 'methylBase'
getAssembly(x)

## S4 method for signature 'methylRaw'
getAssembly(x)

## S4 method for signature 'methylDiff'
getAssembly(x)

## S4 method for signature 'methylRawDB'
getAssembly(x)

## S4 method for signature 'methylBaseDB'
getAssembly(x)

## S4 method for signature 'methylDiffDB'
getAssembly(x)

Arguments

x	an methylBase,methylBaseDB, methylRaw,methylRawDB or methylDiff object

Value

the assembly string for the object

Examples

data(methylKit)

getAssembly(methylBase.obj)
getAssembly(methylDiff.obj)
getAssembly(methylRawList.obj[[1]])

al2na/methylKit documentation built on Feb. 1, 2024, 4:42 p.m.