getContext-methods: get the context of methylation

In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

get the context of methylation

Description

The function returns the context of methylation. For example: "CpG","CHH" or "CHG"

Usage

getContext(x)

## S4 method for signature 'methylBase'
getContext(x)

## S4 method for signature 'methylRaw'
getContext(x)

## S4 method for signature 'methylDiff'
getContext(x)

## S4 method for signature 'methylRawDB'
getContext(x)

## S4 method for signature 'methylBaseDB'
getContext(x)

## S4 method for signature 'methylDiffDB'
getContext(x)

Arguments

x	an methylBase,methylBaseDB, methylRaw,methylRawDB or an methylDiff object

Value

a string for the context methylation

Examples

data(methylKit)

getContext(methylBase.obj)
getContext(methylDiff.obj)
getContext(methylRawList.obj[[1]])

al2na/methylKit documentation built on Feb. 1, 2024, 4:42 p.m.