getDBPath-methods: Get path to database of the methylDB objects

In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

Get path to database of the methylDB objects

Description

The function returns the path to the flat file database that stores the data of the methylRawDB, methylRawListDB, methylBaseDB or methylDiffDB objects.

Usage

getDBPath(x)

## S4 method for signature 'methylRawListDB'
getDBPath(x)

## S4 method for signature 'methylBaseDB'
getDBPath(x)

## S4 method for signature 'methylRawDB'
getDBPath(x)

## S4 method for signature 'methylDiffDB'
getDBPath(x)

Arguments

x	an methylBaseDB,methylRawDB, methylRawListDB or methylDiffDB object

Examples

data(methylKit)

methylBaseDB.obj <- unite(methylRawList.obj,save.db=TRUE,dbdir="methylDB")


#The path to the database is returned
getDBPath(methylBaseDB.obj)


# remove Database again
rm(methylBaseDB.obj)
unlink("methylDB",recursive=TRUE)

al2na/methylKit documentation built on Feb. 1, 2024, 4:42 p.m.