getData-methods: get the data slot from the methylKit objects

In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

get the data slot from the methylKit objects

Description

The functions retrieves the table containing methylation information from methylKit Objects. The data retrived from this function is of a data.frame. This is basically containing all relevant methylation information per genomic region or base.

Usage

getData(x)

## S4 method for signature 'methylBase'
getData(x)

## S4 method for signature 'methylRaw'
getData(x)

## S4 method for signature 'methylDiff'
getData(x)

## S4 method for signature 'methylRawDB'
getData(x)

## S4 method for signature 'methylBaseDB'
getData(x)

## S4 method for signature 'methylDiffDB'
getData(x)

Arguments

x	an methylBase,methylBaseDB, methylRaw,methylRawDB or methylDiff object

Value

data frame for methylation events

Examples

data(methylKit)

# following commands show first lines of returned 
# data.frames from getData() function
head(
getData(methylBase.obj)
)

head( getData(methylDiff.obj))

head(getData(methylRawList.obj[[1]]))

al2na/methylKit documentation built on Feb. 1, 2024, 4:42 p.m.