getSampleID-methods: Get or Set Sample-IDs of the methylKit objects

In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results

Get or Set Sample-IDs of the methylKit objects

Description

The function returns or replaces the sample-ids stored in any of the following methylKit objects: methylRaw, methylRawDB, methylBase, methylBaseDB, methylRawList, methylRawListDB, methylDiff, methylDiffDB.

Usage

getSampleID(x)
getSampleID(x) <- value

getSampleID(x) <- value

## S4 method for signature 'methylRawList'
getSampleID(x)

## S4 replacement method for signature 'methylRawList'
getSampleID(x) <- value

## S4 method for signature 'methylBase'
getSampleID(x)

## S4 replacement method for signature 'methylBase'
getSampleID(x) <- value

## S4 method for signature 'methylRaw'
getSampleID(x)

## S4 replacement method for signature 'methylRaw'
getSampleID(x) <- value

## S4 method for signature 'methylDiff'
getSampleID(x)

## S4 replacement method for signature 'methylDiff'
getSampleID(x) <- value

## S4 method for signature 'methylRawListDB'
getSampleID(x)

## S4 replacement method for signature 'methylRawListDB'
getSampleID(x) <- value

## S4 method for signature 'methylBaseDB'
getSampleID(x)

## S4 replacement method for signature 'methylBaseDB'
getSampleID(x) <- value

## S4 method for signature 'methylRawDB'
getSampleID(x)

## S4 replacement method for signature 'methylRawDB'
getSampleID(x) <- value

## S4 method for signature 'methylDiffDB'
getSampleID(x)

## S4 replacement method for signature 'methylDiffDB'
getSampleID(x) <- value

Arguments

x	an methylBaseDB,methylRawListDB or methylDiffDB object
value	a valid replacement vector for the sample-ids of the object

Examples

data(methylKit)

#The Sample-Ids can be printed ..
getSampleID(methylBase.obj)

# .. or replaced. 
newObj <- methylBase.obj
getSampleID(newObj) <- c("sample1","sample2","sample3","sample4")
getSampleID(newObj)

al2na/methylKit documentation built on Feb. 1, 2024, 4:42 p.m.