methylKit-defunct: Deprecated/Defunct functions
In al2na/methylKit: DNA methylation analysis from high-throughput bisulfite sequencing results
methylKit-defunct R Documentation
Deprecated/Defunct functions
Description
These are deprecated or defunct functions. Most of them
are replaced by genomation functions. See the vignette for
examples on how to use genomation functions for annotation
purposes.
Usage
annotate.WithFeature()
annotate.WithFeature.Flank()
annotate.WithGenicParts()
read.bed()
read.feature.flank()
read.transcript.features()
getFeatsWithTargetsStats()
getFlanks()
getMembers()
getTargetAnnotationStats()
plotTargetAnnotation()
read()
read.bismark()
adjust.methylC()
get.methylDiff()
al2na/methylKit documentation built on Nov. 30, 2024, 5:44 p.m.
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| methylKit-defunct | R Documentation |
Deprecated/Defunct functions
Description
These are deprecated or defunct functions. Most of them are replaced by genomation functions. See the vignette for examples on how to use genomation functions for annotation purposes.
Usage
annotate.WithFeature()
annotate.WithFeature.Flank()
annotate.WithGenicParts()
read.bed()
read.feature.flank()
read.transcript.features()
getFeatsWithTargetsStats()
getFlanks()
getMembers()
getTargetAnnotationStats()
plotTargetAnnotation()
read()
read.bismark()
adjust.methylC()
get.methylDiff()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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