data-raw/process_vignette.R

library(here)

#unlink(here("vignettes/examples/a05_moca_100k.Rmd"))
#unlink(here("vignettes/examples/figure"), recursive = TRUE)
#knitr::opts_knit$set(base.dir = here("vignettes/examples"))
#knitr::knit(here("data-raw/source_a07_moca_100k.Rmd"), output = here("vignettes/examples/a07_moca_100k.Rmd"))

unlink(here("data-raw/output/figures"), recursive = TRUE)
knitr::opts_knit$set(base.dir = here("data-raw/output/"))

knitr::knit(here("data-raw/source_moca_100k.Rmd"), output = here("data-raw/output/a05_moca_100k.Rmd"))

knitr::knit(here("data-raw/source_pseudotime.Rmd"), output = here("data-raw/output/a06_pseudotime.Rmd"))
alexisvdb/singleCellHaystack documentation built on Jan. 17, 2024, 10:45 a.m.