Files in andrew-edwards/sizeSpectra

Fitting Size Spectra to Ecological Data Using Maximum Likelihood

R/data.R R/distributions.R R/fitting.R R/length_weight.R R/likelihood.R R/plotting.R R/s_dplyr.R R/simulating.R R/sizeSpectra.R R/utilities.R README.md data-raw/IBTS-MLEbins.R data-raw/IBTS-analysis.R data-raw/IBTS-data.R data-raw/simulate-data.R data-raw/simulate-data2.R data-raw/species-codes.R doc/MEE_reproduce_1.R doc/MEE_reproduce_1.Rmd doc/MEE_reproduce_2.R doc/MEE_reproduce_2.Rmd doc/MEPS_IBTS_1.R doc/MEPS_IBTS_1.Rmd doc/MEPS_IBTS_2.R doc/MEPS_IBTS_2.Rmd doc/MEPS_IBTS_MLEbins.R doc/MEPS_IBTS_MLEbins.Rmd doc/MEPS_IBTS_all_min_100.R doc/MEPS_IBTS_all_min_100.Rmd doc/MEPS_IBTS_recommend.R doc/MEPS_IBTS_recommend.Rmd doc/MEPS_reproduce_1.R doc/MEPS_reproduce_1.Rmd doc/MEPS_reproduce_2.R doc/MEPS_reproduce_2.Rmd doc/MLEbin_recommend.R doc/MLEbin_recommend.Rmd doc/vignettes_overview.R doc/vignettes_overview.Rmd man/Distributions.Rd man/IBTS_data.Rd man/ISD_bin_plot.Rd man/ISD_bin_plot_nonoverlapping.Rd man/LBN_bin_plot.Rd man/LBNbiom.method.Rd man/LBNbiom.method.counts.Rd man/LBmizbinsFun.Rd man/Llin.method.Rd man/Llin.method.counts.Rd man/MLE.plot.Rd man/MLE.plots.recommend.Rd man/MLEbin.MEPS.cutoff16.Rd man/MLEbin.MEPS.default.Rd man/MLEbin.MEPS.xmin16.Rd man/MLEbin.simulate.Rd man/MLEbins.res.Rd man/MLEmid.MLEbin.conf.Rd man/MLEmid.MLEbin.hist.Rd man/MLEmid.MLEbin.table.Rd man/binData.Rd man/bins_assignment_plot.Rd man/calcLike.Rd man/calcLikeSegments.Rd man/confPlot.Rd man/dataBin.Rd man/dataOrig.Rd man/eight.methods.plot.Rd man/eight.results.default.Rd man/eightMethods.Rd man/eightMethods.count.Rd man/eightMethodsMEE.Rd man/eval.string.dplyr.Rd man/f.Rd man/fullResults.Rd man/gap.barplot.cust.Rd man/histAxes.Rd man/histAxes2.Rd man/is.wholenumber.Rd man/legJust.Rd man/lengthToMass.Rd man/length_weight_plot.Rd man/lm.line.Rd man/log2bins.Rd man/logTicks.Rd man/massToLength.Rd man/negLL.PLB.Rd man/negLL.PLB.binned.Rd man/negLL.PLB.binned.species.Rd man/negLL.PLB.bins.species.Rd man/negLL.PLB.counts.Rd man/pBiomass.Rd man/pBiomassBins.Rd man/pBiomassBinsConfs.Rd man/plot_binned_fitted.Rd man/profLike.Rd man/qqtab.Rd man/s_select.Rd man/specCodeNames.Rd man/species_bins_plots.Rd man/timeSerPlot.Rd man/timeSerPlot.eight.Rd man/totalBiomass.Rd vignettes/MEE_reproduce_1.Rmd vignettes/MEE_reproduce_2.Rmd vignettes/MEPS_IBTS_1.Rmd vignettes/MEPS_IBTS_2.Rmd vignettes/MEPS_IBTS_MLEbins.Rmd vignettes/MEPS_IBTS_all_min_100.Rmd vignettes/MEPS_IBTS_recommend.Rmd vignettes/MEPS_reproduce_1.Rmd vignettes/MEPS_reproduce_2.Rmd vignettes/MLEbin_recommend.Rmd vignettes/Vignettes_overview.Rmd