biDNAcopy.findCNVs: Find copy number variations (DNAcopy, bivariate)

Description Usage Arguments Value

View source: R/findCNVs.R

Description

biDNAcopy.findCNVs classifies the binned read counts into several states which represent copy-number-variation using read count information from both strands.

Usage

1
biDNAcopy.findCNVs(binned.data, ID = NULL, CNgrid.start = 0.5)

Arguments

binned.data

A GRanges-class object with binned read counts.

ID

An identifier that will be used to identify this sample in various downstream functions. Could be the file name of the binned.data for example.

CNgrid.start

Start parameter for the CNgrid variable. Very empiric. Set to 1.5 for normal data and 0.5 for Strand-seq data.

Value

An aneuHMM object.


ataudt/aneufinder documentation built on Nov. 21, 2018, 10:10 a.m.