loadFromFiles: Load 'AneuFinder' objects from file

In ataudt/aneufinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Load AneuFinder objects from file

Description

Wrapper to load AneuFinder objects from file and check the class of the loaded objects.

Usage

loadFromFiles(files, check.class = c("GRanges", "GRangesList", "aneuHMM",
  "aneuBiHMM"))

Arguments

files	A list of GRanges-class, GRangesList, aneuHMM or aneuBiHMM objects or a character vector with files that contain such objects.
check.class	Any combination of c('GRanges', 'GRangesList', 'aneuHMM', 'aneuBiHMM'). If any of the loaded objects does not belong to the specified class, an error is thrown.

Value

A list of GRanges-class, GRangesList, aneuHMM or aneuBiHMM objects.

Examples

## Get some files that you want to load
folder <- system.file("extdata", "primary-lung", "hmms", package="AneuFinderData")
files <- list.files(folder, full.names=TRUE)
## Load and plot the first ten
hmms <- loadFromFiles(files[1:10])
lapply(hmms, plot, type='profile')

ataudt/aneufinder documentation built on April 18, 2023, 4:20 a.m.