plot.aneuHMM: Plotting function for 'aneuHMM' objects

Description Usage Arguments Value

View source: R/plotting.R

Description

Make different types of plots for aneuHMM objects.

Usage

1
2
## S3 method for class 'aneuHMM'
plot(x, type = "profile", ...)

Arguments

x

An aneuHMM object.

type

Type of the plot, one of c('profile', 'histogram', 'karyogram'). You can also specify the type with an integer number.

karyogram

A karyogram-like chromosome overview with CNV-state.

histogram

A histogram of binned read counts with fitted mixture distribution.

karyogram

An profile with read counts and CNV-state.

...

Additional arguments for the different plot types.

Value

A ggplot object.


ataudt/aneufinder documentation built on Nov. 21, 2018, 10:10 a.m.