colors: 'AneuFinder' color scheme

In ataudt/aneufinder: Analysis of Copy Number Variation in Single-Cell-Sequencing Data

AneuFinder color scheme

Description

Get the color schemes that are used in the AneuFinder plots.

Usage

stateColors(states = c("zero-inflation", paste0(0:10, "-somy"), "total"))

strandColors(strands = c("+", "-"))

breakpointColors(breaktypes = c("CNB", "SCE", "CNB+SCE", "other"))

Arguments

states	A character vector with states whose color should be returned.
strands	A character vector with strands whose color should be returned. Any combination of c('+','-','*').
breaktypes	A character vector with breakpoint types whose color should be returned. Any combination of c('CNB','SCE','CNB+SCE','other').

Value

A character vector with colors.

Functions

• stateColors: Colors that are used for the states.

• strandColors: Colors that are used to distinguish strands.

• breakpointColors: Colors that are used for breakpoint types.

Examples

## Make a nice pie chart with the AneuFinder state color scheme
statecolors <- stateColors()
pie(rep(1,length(statecolors)), labels=names(statecolors), col=statecolors)

## Make a nice pie chart with the AneuFinder strand color scheme
strandcolors <- strandColors()
pie(rep(1,length(strandcolors)), labels=names(strandcolors), col=strandcolors)

## Make a nice pie chart with the AneuFinder breakpoint-type color scheme
breakpointcolors <- breakpointColors()
pie(rep(1,length(breakpointcolors)), labels=names(breakpointcolors), col=breakpointcolors)

ataudt/aneufinder documentation built on April 18, 2023, 4:20 a.m.