dT2_plotProfile: dT2 plot Profile

In avhgenomics/bioKIT: bioKIT: Common functions for routine molecular biology applications.

Description

Wrapper for deepTools2 plotProfile function.

Usage

dT2_plotProfile(gz_file, output_file, dpi = 600, run_as_sys = F,
  outFileSortedRegions = NULL, outFileNameData = NULL, perGroup = F)

Arguments

gz_file	gz file from dT2_computeMatrix
output_file	output file (.png, jpg, etc)
dpi	Resolution of the image
run_as_sys	Run the command as system.
outFileSortedRegions	path to output bedfile for sorted regions
outFileNameData	path to output tab file for underlying data.
perGroup	calculate profiles as per group, rather than per sample.

Value

returns a command string, or runs the command and returns an image.

Examples

# ADD_EXAMPLES_HERE

avhgenomics/bioKIT documentation built on May 5, 2019, 12:29 a.m.