make_cut_matrix_atactk: Make Cut Matrix
In avhgenomics/bioKIT: bioKIT: Common functions for routine molecular biology applications.
Description
Usage
Arguments
Value
Examples
View source: R/atacktk_wrapper.R
Description
Basic Wrapper for ATACTK: Makes a cut matrix based on the input criteria; currently returns a string with the command to run in terminal.
Usage
1
2
3
make_cut_matrix_atactk(aggregate.setting = T, discrete.setting = F,
bins = c("1-100", "180-1000"), resolution = 1, bam_file, bed_file,
output_file)
Arguments
aggregate.setting
DESCRIPTION.
discrete.setting
DESCRIPTION.
bins
DESCRIPTION.
resolution
DESCRIPTION.
bam_file
DESCRIPTION.
bed_file
DESCRIPTION.
output_file
DESCRIPTION.
Value
RETURN_DESCRIPTION
Examples
1
# ADD_EXAMPLES_HERE
avhgenomics/bioKIT documentation built on May 5, 2019, 12:29 a.m.
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Description Usage Arguments Value Examples
View source: R/atacktk_wrapper.R
Description
Basic Wrapper for ATACTK: Makes a cut matrix based on the input criteria; currently returns a string with the command to run in terminal.
Usage
1 2 3 | make_cut_matrix_atactk(aggregate.setting = T, discrete.setting = F,
bins = c("1-100", "180-1000"), resolution = 1, bam_file, bed_file,
output_file)
|
Arguments
aggregate.setting |
DESCRIPTION. |
discrete.setting |
DESCRIPTION. |
bins |
DESCRIPTION. |
resolution |
DESCRIPTION. |
bam_file |
DESCRIPTION. |
bed_file |
DESCRIPTION. |
output_file |
DESCRIPTION. |
Value
RETURN_DESCRIPTION
Examples
1 | # ADD_EXAMPLES_HERE
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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