macs2_callpeak: macs2 callpeak

In avhgenomics/bioKIT: bioKIT: Common functions for routine molecular biology applications.

Description

Wrapper for macs2 peak calling

Usage

macs2_callpeak(treated_bam_file, control_bam_file, experiment_name,
  output_folder, file_format = "AUTO", genome = "mm", pvalue = NULL,
  qvalue = 0.05, nomodel = T, extsize = NULL, run_as_sys = F)

Arguments

treated_bam_file	DESCRIPTION.
control_bam_file	DESCRIPTION.
experiment_name	DESCRIPTION.
output_folder	DESCRIPTION.
file_format	DESCRIPTION.
genome	DESCRIPTION.
pvalue	DESCRIPTION.
qvalue	DESCRIPTION.
nomodel	DESCRIPTION.
extsize	DESCRIPTION.
run_as_sys	DESCRIPTION.

Value

RETURN_DESCRIPTION

Examples

# ADD_EXAMPLES_HERE

avhgenomics/bioKIT documentation built on May 5, 2019, 12:29 a.m.