split_motifs: Split Motifs

In avhgenomics/bioKIT: bioKIT: Common functions for routine molecular biology applications.

Description

This takes an annotated txt file from annotatePeaks.pl (after loading as a df) and performs minor cleaning functions on the annotated motif set. This currently works for 1 motif at a time.

Usage

split_motifs(annotated_df, motif_col, zero_based = F, filter_for_motifs = F,
  motif_label = NULL, return_bedfile_format = F)

Arguments

annotated_df	the annotated df.
motif_col	the name of the motif column as a string.
zero_based	Are the locations 0-based or 1 based? logical.
filter_for_motifs	Remove any peaks that do not contain a motif? Logical.
motif_label	Write a label to fill in for the motif.
return_bedfile_format	Return the motifs in a bed-style structure? Requires filter_for_motifs to be true.

Value

returns a df.

Examples

# ADD_EXAMPLES_HERE

avhgenomics/bioKIT documentation built on May 5, 2019, 12:29 a.m.